Line data    Source code

       1             : #pragma once
       2             : 
       3             : #include "elsaDefines.h"
       4             : #include "Cloneable.h"
       5             : 
       6             : #include <vector>
       7             : 
       8             : namespace elsa
       9             : {
      10             : 
      11             :     /**
      12             :      * @brief Base class for representing metadata for linearized n-dimensional signal stored in
      13             :      * memory
      14             :      *
      15             :      * @author Matthias Wieczorek - initial code
      16             :      * @author Tobias Lasser - modularization, modernization
      17             :      * @author Maximilian Hornung - various enhancements
      18             :      * @author David Frank - inheritance restructuring
      19             :      *
      20             :      * This class provides an interface for metadata about a signal that is stored in memory. This
      21             :      * base class provides other descriptor subclasses with a fundamental interface to access the
      22             :      * important parameters (i.e. dimensionality, size and spacing) of the metadata.
      23             :      *
      24             :      */
      25             :     class DataDescriptor : public Cloneable<DataDescriptor>
      26             :     {
      27             :     public:
      28             :         /// delete default constructor (having no metadata is invalid)
      29             :         DataDescriptor() = delete;
      30             : 
      31             :         /// Pure virtual destructor
      32             :         virtual ~DataDescriptor() = 0;
      33             : 
      34             :         /**
      35             :          * @brief Constructor for DataDescriptor, accepts dimension and size
      36             :          *
      37             :          * @param[in] numberOfCoefficientsPerDimension vector containing the number of coefficients
      38             :          * per dimension, (dimension is set implicitly from the size of the vector)
      39             :          *
      40             :          * @throw InvalidArgumentError if any number of coefficients is non-positive
      41             :          */
      42             :         explicit DataDescriptor(IndexVector_t numberOfCoefficientsPerDimension);
      43             : 
      44             :         /**
      45             :          * @brief Constructor for DataDescriptor, accepts dimension, size and spacing
      46             :          *
      47             :          * @param[in] numberOfCoefficientsPerDimension vector containing the number of coefficients
      48             :          * per dimension, (dimension is set implicitly from the size of the vector)
      49             :          * @param[in] spacingPerDimension vector containing the spacing per dimension
      50             :          *
      51             :          * @throw InvalidArgumentError if any number of coefficients is non-positive,
      52             :          *        or sizes of numberOfCoefficientsPerDimension and spacingPerDimension do not match
      53             :          */
      54             :         explicit DataDescriptor(IndexVector_t numberOfCoefficientsPerDimension,
      55             :                                 RealVector_t spacingPerDimension);
      56             : 
      57             :         /// return the number of dimensions
      58             :         index_t getNumberOfDimensions() const;
      59             : 
      60             :         /// return the total number of coefficients
      61             :         index_t getNumberOfCoefficients() const;
      62             : 
      63             :         /// return the number of coefficients per dimension
      64             :         IndexVector_t getNumberOfCoefficientsPerDimension() const;
      65             : 
      66             :         /// return the spacing per dimension
      67             :         RealVector_t getSpacingPerDimension() const;
      68             : 
      69             :         /// return the location of the origin (typically the center)
      70             :         RealVector_t getLocationOfOrigin() const;
      71             : 
      72             :         /**
      73             :          * @brief computes the linearized index in the data vector from local coordinates
      74             :          *
      75             :          * @param[in] coordinate vector containing the local coordinate
      76             :          * @return the index into the linearized data vector
      77             :          *
      78             :          * The local coordinates are integers, running from 0 to
      79             :          * _numberOfCoefficientsPerDimension[i]-1 for every dimension i = 0,...,_numberOfDimensions.
      80             :          * Linearization is assumed to be done in order of the dimensions.
      81             :          */
      82             :         index_t getIndexFromCoordinate(const elsa::IndexVector_t& coordinate) const;
      83             : 
      84             :         /**
      85             :          * @brief computes the local coordinates from a linearized index
      86             :          *
      87             :          * @param[in] index into the linearized data vector
      88             :          * @return the local coordinate corresponding to the index
      89             :          *
      90             :          * The local coordinates are integers, running from 0 to
      91             :          * _numberOfCoefficientsPerDimension[i]-1 for every dimension i =
      92             :          * 0,...,_numberOfDimensions. Linearization is assumed to be done in order of the
      93             :          * dimensions.
      94             :          */
      95             :         IndexVector_t getCoordinateFromIndex(index_t index) const;
      96             : 
      97             :     protected:
      98             :         /// Number of dimensions
      99             :         index_t _numberOfDimensions;
     100             : 
     101             :         /// vector containing the number of coefficients per dimension
     102             :         IndexVector_t _numberOfCoefficientsPerDimension;
     103             : 
     104             :         /// vector containing the spacing per dimension
     105             :         RealVector_t _spacingPerDimension;
     106             : 
     107             :         /// vector containing precomputed partial products of coefficients per dimension for index
     108             :         /// computations
     109             :         IndexVector_t _productOfCoefficientsPerDimension;
     110             : 
     111             :         /// vector containing the origin of the described volume (typically the center)
     112             :         RealVector_t _locationOfOrigin;
     113             : 
     114             :         /// default copy constructor, hidden from non-derived classes to prevent potential slicing
     115        3439 :         DataDescriptor(const DataDescriptor&) = default;
     116             : 
     117             :         /// default move constructor, hidden from non-derived classes to prevent potential slicing
     118         494 :         DataDescriptor(DataDescriptor&&) = default;
     119             : 
     120             :         /// implement the polymorphic comparison operation
     121             :         bool isEqual(const DataDescriptor& other) const override;
     122             :     };
     123             : 
     124             : } // namespace elsa